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May 6 – 9, 2025
Abbaye de Royaumont, Asnières-sur-Oise, France
Europe/Paris timezone

Agenda

*All times are in (GMT+2), Central European Summer Time)

Last updated April 16, 2025

Tuesday, May 6, 2025

4:00 pmRegistration
6:00 pmWelcome Reception
7:00 pmDinner

Wednesday, May 7, 2025

8:00 amBreakfast
9:00 amOpening remarks
 Genomics & Bioinformatics  
Track chairs: Bethany Dearlove and Manon Ragonnet-Cronin
9:10amVIRUS VS VIRUS: EVOLUTION AND FUNCTION OF AN ENDOGENOUS RETROVIRUS-DERIVED RESTRICTION FACTOR    
John Coffin
9:30 amMACHINE LEARNING REVEALS KEY GLYCOPROTEIN MUTATIONS AND RAPIDLY ASSIGNS LASSA VIRUS LINEAGES  
Denise Kühnert
9:50 amSARITA: A GENERATIVE LARGE LANGUAGE MODEL ACCURATELY PREDICTING THE EMERGENCE OF SARS-COV-2 CRITICAL MUTATIONS  
Simone Rancati
10:10 amTRANSFORMERS FOR EPIDEMIOLOGICAL DYNAMICS: FROM GENOMIC DATA TO EPIDEMIOLOGICAL PARAMETERS  
Vincent Garot
  
10:30 amBreak
 Phylodynamics & Phylogeography  
Track chairs: Denise Kühnert and Philippe Lemey
11:00 amUNVEILING NOVEL HCOV-OC43 GENOTYPES: THE HIDDEN WORLD OF INTRA-HOST EVOLUTION  
Frida Belinky
11:20 amOPTIMIZING SAMPLING IN GENOMIC EPIDEMIOLOGY USING MARKOV DECISION PROCESSES  
David Rasmussen
11:40 amTHE CHANGING SARS-COV-2 FITNESS LANDSCAPE AND SELECTION PRESSURES  
Charlie Hamilton
12:00 pmHOW DOES DATE-ROUNDING AFFECT PHYLODYNAMIC INFERENCE FOR PUBLIC HEALTH?  
Sebastian Duchene
 Flash Talks
12:05 pmASSESSING THE EFFECT OF MODEL SPECIFICATION AND PRIOR SENSITIVITY ON BAYESIAN TESTS OF TEMPORAL SIGNAL FOR VIRAL MOLECULAR SEQUENCES  
John Tay
12:10 pmPHYLODYNAMIC INFERENCE SUGGESTS INTRODUCTIONS AS MAIN DRIVER OF MPOX CLADE II OUTBREAK IN 2022 IN SLOVENIA  
Bastiaan van der Roest
12:15 pmBAYESIAN PHYLODYNAMIC INFERENCE OF HETEROGENEOUS EPIDEMIC TRAJECTORIES USING GENOMIC DATA  
Timothy Vaughan
12:20 pmVIRAL SIMULATION REVEALS OVERESTIMATION BIAS IN WITHIN-HOST PHYLODYNAMIC MIGRATION RATE ESTIMATES UNDER SELECTION  
Roland Regoes
12:25 pmBAYESIAN OUTBREAK RECONSTRUCTION WITH PHYLOGENETIC AND TRANSMISSION TREES IN BEAST2  
Caroline Colijn
12:30 pmQuestion period
  
1:00 pmLunch
 Vaccines & Immune Escape  
Track chairs: Daniel Reeves and Roger Kouyos
2:30 pmWASTEWATER-BASED GENOMIC SURVEILLANCE ENABLES MONITORING OF INFLUENZA A VIRUS EVOLUTION  
Anika John
2:50 pmA MECHANISTIC MODEL OF INITIAL AND PERSISTING ANTIBODY RESPONSE FOLLOWING EBOLA VACCINATION IN THE PREVAC TRIAL  
Mélanie Prague
3:10 pmMAPPING THE FUNCTIONAL DIVERSITY OF BNAB EPITOPES LINKS HIV-1 ENV MUTATIONS TO BNAB SENSITIVITY  
Eric Lewitus
3:30 pmANOMALOUS EVOLUTION OF WILDTYPE POLIOVIRUS FOLLOWING THE WITHDRAWAL OF TYPE 2 ORAL POLIOVIRUS VACCINE  
Michael Famulare
3:50 pmEFFECTIVE POPULATION DYNAMICS UTILISED TO INVESTIGATE EVOLUTION IN VIRAL VACCINE ESCAPE  
Carol Leitch
 Flash Talks
4:10 pmPHYLOGENETIC DISCORDANCE CANNOT IDENTIFY GENOMIC REASSORTMENT EVENTS: A CASE STUDY WITH THE AVIAN INFLUENZA VIRUS H5NX 
Hugo Castelán Sánchez
4:15 pmA SINGLE-COUNTRY COMPARATIVE ANALYSIS OF THE EVOLUTIONARY DYNAMICS OF HUMAN CORONAVIRUSES  
Kate Duggan
4:20 pmSINGLE-CELL DNA SEQUENCING PROVIDES IMPROVED RESOLUTION OF RESERVOIR CONTRIBUTION TO HIV EVOLUTION AND REBOUND  
Brittany Magalis
4:25 pmCLUSTERFINDER: A FRAMEWORK TO ASSIST CLUSTER INVESTIGATION WITH PATHOGEN GENOMIC ANALYSIS FOR RESPIRATORY VIRUSES  
Stéphanie Dan
4:30 pmQuestion period
  
5:00 pmPoster Session I
7:00 pmDinner

Thursday, May 8, 2025 

8:00 amBreakfast
  
 Within Host Dynamics & Adaptation I  
Track chairs: Alison Hill and Katrina Lythgoe
9:00 amIN DEPTH SEQUENCING OF A SERIALLY SAMPLED HOUSEHOLD COHORT REVEALS THE WITHIN-HOST DYNAMICS OF OMICRON SARS-COV-2 AND RARE SELECTION OF NOVEL SPIKE VARIANTS  
Emily Bendall
9:20 amESTABLISHMENT, TURNOVER, AND REACTIVATION POTENTIAL OF THE LATENT RESERVOIR IN SIV/SHIV  
Mykola Pinkevych
9:40 amVIRAL POPULATION SIZE IMPACTS EVOLUTIONARY DYNAMICS IN SHIV-INFECTED RHESUS MACAQUES  
Michael Hogarty
10:00 amTHE DYNAMICS OF INDELS AT A WITHIN-HOST LEVEL DURING PERSISTENT INFECTION  
Isobel Guthrie
  
10:20 amBreak
 Software, Tools & Methods  
Track chairs: Anna Zhokova and Art Poon
10:50 amGENSPECTRUM: A DASHBOARD FRAMEWORK FOR GENOMIC EPIDEMIOLOGY 
Chaoran Chen
11:10 amHIGH MUTATION RATE VARIATION WITHIN AND ACROSS HIV-1 STRAINS  
Adam Nitido
11:30 amPATHOPLEXUS: A COMMUNITY-DRIVEN SOLUTION FOR TRANSPARENT AND EQUITABLEVIRAL GENOMIC DATA SHARING  
Emma Hodcroft
11:50 amNAVIGATING SAMPLING BIAS IN DISCRETE PHYLOGEOGRAPHIC ANALYSIS: ASSESSING THE PERFORMANCE OF AN ADJUSTED BAYES FACTOR  
Fabiana Gambaro
12:10 pmQUANTIFYING THE DYNAMICS OF KAPOSI’S SARCOMA-ASSOCIATED HERPESVIRUS PERSISTENCE  
Madeleine Gastonguay
 Flash Talks
12:30 pmDESIGNING A VIRUS LIBRARY FOR ASCERTAINING INFECTIONS AND IDENTIFYING VIRAL EPITOPES IN A LONGITUDINAL COHORT  
Manon Ragonnet-Cronin
12:35 pmMATHEMATICAL MODELLING TO HELP DESIGN VACCINE TRIALS, AND LASSA FEVER CASE STUDY  
Chris Wymant
12:40 pmTHE INTERPLAY OF WITHIN-HOST AND BETWEEN-HOST DYNAMICS REGULATES HIV-1 EPIDEMIOLOGICAL OUTCOMES  
Macauley Locke
12:45 pmTRANSMISSION CLUSTER ANALYSIS OF DRUG RESISTANCE MUTATIONS IN HIV-1 SUBTYPE A6 IN THE FSU REGION  
Anastasiia Nefedova
12:50 pmQUANTIFYING UNCERTAINTY IN HIV TRANSMISSION FROM PERSONS WITH LOW-LEVEL VIREMIA  
Thayer Anderson
12:55 pmQuestion period
  
1:00 pmLunch
 Transmission Dynamics & Clusters  
Track chairs: Emma Hodcroft and Oliver Ratmann
2:30 pmACCOUNTING FOR PARTNER NOTIFICATION IN EPIDEMIOLOGICAL BIRTH-DEATH MODELS  
Anna Zhukova
2:50 pmESTIMATION OF SERIAL INTERVALS IN PARTIALLY-SAMPLED TRANSMISSION CLUSTERS USING VIRUS SEQUENCES  
Caroline Colijn
3:10 pmWHOLE GENOME SEQUENCING ANALYSIS OF SARS-COV-2 HOUSEHOLD TRANSMISSION IN CHIANG MAI, THAILAND DURING 2022–2024  
Premmarin Inmonthian
3:30 pmEPISEWER – A NOVEL APPROACH TO QUANTIFY EPIDEMIOLOGICAL DYNAMICS BASED ON SEWAGE SAMPLES  
Tanja Stadler
  
3:50 pmBreak
 Flash Talks
4:20 pmANTIVIRAL TREATMENTS TO PREVENT OUTBREAKS OF RESPIRATORY VIRUSES IN NURSING HOMES: A MODELLING ANALYSIS  
Hind Zaaraoui
4:25 pmINTEGRATING FOLLICULAR DENDRITIC CELLS AND SPATIAL DYNAMICS TO IMPROVE HIV MODELING IN LYMPHOID TISSUE  
Sobia Anam
4:30 pmCOMPARISON OF THE GENOMIC COMPOSITION OF ARCHIVED CLOTTING FACTORS FROM 1974 TO 1992 PRE- AND POST-VIRAL INACTIVATION  
Kaitlin Reid
4:35 pmNEWLY IDENTIFIED JINGMENVIRUS SEQUENCES FROM OPEN ACCESS NEXT-GENERATION SEQUENCING DATACONTRIBUTE TO PROPOSED TAXONOMIC CLASSIFICATION CRITERIA  
Agathe Colmant
4:40 pmEXPLORING GENETIC SIGNATURES OF INFLUENZA A VIRUSES AT THE SWINE-HUMAN INTERFACE WITH PHYLOGENETIC AND ANCESTRAL SEQUENCE RECONSTRUCTION  
Klara Marie Anker
4:45 pmRECONSTRUCTING THE PAST TRANSMISSION DYNAMICS OF ENTEROVIRUS D68 WITH GENETIC SEQUENCE DATA  
David Jorgensen
4:50 pmQuestion period
  
5:00 pmPoster Session II
7:00 pmDinner

Friday, May 9, 2025

8:00 amBreakfast
  
 Zoonoses & Emerging Infections  
Track chairs: Jeffrey Joy, Raphaelle Metras and Tetyana Vasylyeva
9:00 amGENOMIC SURVEILLANCE REVEALS A DENGUE 2 VIRUS EPIDEMIC LINEAGE WITH A MARKED DECREASE IN SENSIVITY TO MOSNODENVIR  
Selin Sen
9:20 amEMERGENCE OF NOVEL MOSAIC G9P[6] ROTAVIRUSES THROUGH MULTIPLE INTRAGENOGROUP REASSORTMENT EVENTS POST VACCINE INTRODUCTION IN BLANTYRE MALAWI  
Chimwemwe Mhango
9:40 amSPILLOVER RATE IS NOT A PREDICTOR OF HOST JUMP RISK  
David Kennedy
10:00 amDRIVERS AND DYNAMICS OF A SARS-COV-2 SISTER-CLADE SARBECOVIRUS DURING A LONG-TERM FOLLOW-UP OF A RHINOLOPHUS FERRUMEQUINUM COLONY  
Daphné de Riols de Fonclare
10:20 amTHE EMERGENCE AND EVOLUTION OF H5N1 IN DAIRY CATTLE IN THE UNITED STATES  
Jonathan Pekar
  
10:40 amBreak
 Within Host Dynamics & Adaptation II  
Track chairs: Alison Hill and Katrina Lythgoe
11:00 amIMPACT OF HIV-1 VIRAL LOAD BLIPS ON HIV-1 BINDING ANTIBODY LEVEL DYNAMICS  
Baptiste Elie
11:20 amVIRAL FITNESS INCREASES SIGNIFICANTLY IN A LONG-TERM HIV-1 EVOLUTION EXPERIMENT  
Sneha Sundar
11:40 amVIRAL AND IMMUNE DYNAMICS OF GENITAL HUMAN PAPILLOMAVIRUS INFECTIONS IN YOUNG WOMEN WITH HIGH TEMPORAL RESOLUTION  
Nicolas Tessandier
12:00 pmIN-DEPTH CHARACTERIZATION OF THE SIV TISSUE RESERVOIR DYNAMICS  
Ramon Lorenzo-Redondo
  
12:30 pmClosing remarks and adjournment