33rd International Dynamics & Evolution of Human Viruses

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Genomics & Surveillance

Software, Tools & Methods

Evolutionary Dynamics of HIV

Phylodynamics & Phylogeography

Transmission Dynamics & Clusters

Vaccines & Immune Escape

Within-Host Dynamics & Adaptation

Zoonoses & Emerging Infections

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Contributions*

A comparative analysis of different UK-wide SARS-CoV-2 surveillance strategies to detect early lineage growth (in session "Genomics & Surveillance")

A SINGLE DOSE OF MONOCLONAL ANTIBODY DELAYS HIV-1 INFECTION IN OWL MONKEYS (in session "Vaccines & Immune Escape")

A Specialized Virus Microenvironment Sustains Durable HIV/SIV Reservoirs During Therapy (in session "Within-Host Dynamics & Adaptation")

ALL THE SINGLE GENOMES: DEMOGRAPHIC INFERENCE USING THE DISTRIBUTION OF CLUSTERS AND SINGLETONS OBSERVED IN GENOMIC EPIDEMIOLOGY STUDIES (in session "Transmission Dynamics & Clusters")

Comparative patterns of recombination and selection in seasonal human coronaviruses (in session "Phylodynamics & Phylogeography")

Conflicting evolutionary pressures shape a within-host deletion hotspot in SARS-CoV-2 NSP1 linked to innate immune escape (in session "Within-Host Dynamics & Adaptation")

Continuous emergence of sylvatic strains of dengue viruses in humans. (in session "Zoonoses & Emerging Infections")

DAMPA - accelerated and simplified design of probe panels for targeted metagenomics using pangenome graphs. (in session "Software, Tools & Methods")

Deep haplotype-resolved sequencing reveals the prevalence of genetic background specific escape mutations in broadly neutralizing antibody trials (in session "Vaccines & Immune Escape")

DYNAMICS OF VIRAL REPLICATION AND SPREAD IN TISSUES DURING EARLY SIV INFECTION (in session "Evolutionary Dynamics of HIV")

ECHO: A LIGHTWEIGHT TOOL FOR INFERRING MISSING CASE COUNTS FROM OUTBREAK TREES (in session "Software, Tools & Methods")

Ecological Correlates of Flavivirus Circulation: Uncovering the Evolution and Transmission of Edge Hill Virus (EHV) in Australia (in session "Zoonoses & Emerging Infections")

ESTIMATING THE RATE OF GEOGRAPHICAL SPREAD OF PATHOGENS USING PAIRWISE GENETIC DISTANCE DISTRIBUTIONS (in session "Phylodynamics & Phylogeography")

Evolutionary indicators of viral social behavior are significant predictors of progression to SAIDS (in session "Within-Host Dynamics & Adaptation")

FROM PINNEO TO PANEL: A CURATED LINEAGE SPECIFIC REFERENCE PANEL FOR LASSA VIRUS (LASV) CLASSIFICATION AND EVOLUTIONARY INFERENCE (in session "Zoonoses & Emerging Infections")

Genomic insights into G1P[8] rotavirus strains reveals lineage-specific differences in disease severity among Malawian children (in session "Genomics & Surveillance")

INCREASED GENOMIC DIVERSIFICATION FREQUENCY OF HUMAN RESPIRATORY SYNCYTIAL VIRUS (HRSV) TYPE A IN A PEDIATRIC COHORT IN THE UNITED STATES AFTER THE ONSET OF THE COVID-19 PANDEMIC (in session "Genomics & Surveillance")

INTEGRATING SYNTHETIC PHYLODYNAMIC LIBRARIES INTO SHORT-TERM INFECTIOUS DISEASE FORECASTING (in session "Software, Tools & Methods")

Modelling Mpox clade II and ongoing dynamics in MSM from Berlin. (in session "Transmission Dynamics & Clusters")

Multi-type point processes to characterise infectious disease transmission across many covariates (in session "Transmission Dynamics & Clusters")

MUTATIONAL SUPPLY SHAPES HIV EVOLUTION (in session "Evolutionary Dynamics of HIV")

NETWORK-BASED DETECTION OF HIV-1 RECOMBINATION REVEALS UNDERLYING SUBTYPE ARCHITECTURE (in session "Evolutionary Dynamics of HIV")

OPOSSUM: RECONTRUCTING VIRAL QUASISPECIES FROM NOISY LONG-READ SEQUENCING (in session "Software, Tools & Methods")

Phylodynamic Evaluation of Progress Towards the “Ending the HIV Epidemic” Goals in the New York City (in session "Evolutionary Dynamics of HIV")

Phylogenetic clustering analysis shows diverse transmission contexts for transgender people living with HIV in British Columbia, Canada (in session "Transmission Dynamics & Clusters")

Phylogeographic insights into 2023-2024 mpox virus resurgence in New York City and beyond. (in session "Phylodynamics & Phylogeography")

RECOMBINATION IN VACCINE-DERIVED POLIOVIRUSES: INSIGHTS FROM PUBLIC SEQUENCING DATA (in session "Genomics & Surveillance")

Substantial Deceleration of Adaptation of HIV-1 Within 1,500 Generations in an Experimental Evolution: A Genomic Perspective (in session "Evolutionary Dynamics of HIV")

Suppression and fragmentation of HIV transmission following scale-up of TasP and PrEP in British Columbia, Canada: a population level phylogenetic study (in session "Evolutionary Dynamics of HIV")

THE EVOLUTION AND SPREAD OF WEST NILE VIRUS ACROSS EUROPE (in session "Phylodynamics & Phylogeography")

THE EVOLUTIONARY AND EPIDEMIOLOGICAL CONSEQUENCES OF WANING IMMUNITY TO RESPIRATORY VIRUSES (in session "Vaccines & Immune Escape")

THE ROLE OF PROLONGED INFECTIONS IN THE EMERGENCE OF NOROVIRUS GII.4 VARIANTS (in session "Within-Host Dynamics & Adaptation")

THREE NEW BAYESIAN AND FIDUCIAL ANALYSIS METHODOLOGIES FOR HIV INTEGRATION SITE ANALYSIS (in session "Evolutionary Dynamics of HIV")

TOGGLING OF BOTH SYNONYMOUS AND NONSYNONYMOUS MUTATIONS CAN EXPLAIN WHY MEASURED RATES OF HIV EVOLUTION ARE FASTER WITHIN- THAN BETWEEN-HOST (in session "Evolutionary Dynamics of HIV")

Unmasking Pathogen-Host Local Structural Mimicry in the AI era (in session "Vaccines & Immune Escape")

vir2vec: a pan-viral genomic language model and benchmark for viral genome understanding (in session "Software, Tools & Methods")

VIRUSES EVOLVE; NAMES SHOULD TOO: A NEW FRAMEWORK FOR ENTEROVIRUS CLADES (in session "Software, Tools & Methods")

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5/19/26

5/20/26

5/21/26

5/22/26

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