*All times are in (GMT-8) Pacific Standard Time
Tuesday, June 21, 2022
| 3:00 pm | Registration |
| 5:00 pm | Welcome Reception |
Wednesday, June 22, 2022
| Genomics & Bioinformatics Session chairs: Aine O'Toole & Jeffrey Joy |
|
| 8:05 am |
GENOME-FIRST APPROACH TO THE DETECTION OF EMERGING RESISTANCE TO NOVEL THERAPEUTIC AGENTS FOR SARS-COV-2 |
| 8:30 am | SINGLE-CELL DNA SEQUENCING PROVIDES IMPROVED RESOLUTION OF RESERVOIR CONTRIBUTION TO VIRAL EVOLUTION Lauren Droske |
| 8:55 am | SURFACE EXPOSED VIRUS PROTEINS ARE NOT SO DIFFERENT AFTER ALL Sareh Bagherichimeh |
| 9:20 am | DRIVERS OF ADAPTIVE EVOLUTION DURING CHRONIC SARS-COV-2 INFECTIONS Sheri Harari |
| 9:45 am | Break |
| Origins & Emergence I Session chairs: Emma Hodcroft & Joshua Herbeck |
|
| 10:05 am | THE ORIGINS AND MOLECULAR EVOLUTION OF THE SARS-COV-2 LINEAGE B.1.1.7 IN THE UK Verity Hill |
| 10:30 am | INTENSIFICATION AND RELAXATION OF SELECTION IN VIRUSES DURING ATTENUATION AND GAIN-OF-FUNCTION PASSAGE: IMPLICATIONS FOR THE ORIGINS OF THE 1977 H1N1 AND COVID-19 PANDEMICS Jennifer Havens |
| 10:55 am |
RECONSTRUCTION AND FUNCTIONAL CHARACTERIZATION OF THE ANCESTRAL NEF PROTEIN OF PRIMATE LENTIVIRUSES |
| 11:20 am | THE HUANAN MARKET WAS THE EPICENTER OF SARS-COV-2 EMERGENCE Mike Worobey |
| 11:45 am |
SARS-COV-2 EMERGENCE VERY LIKELY RESULTED FROM AT LEAST TWO ZOONOTIC EVENTS |
| 12:10 pm |
Lunch |
| Origins & Emergence II Session chairs: Michael Worobey & Verity Hill |
|
| 1:00 pm | DECIPHERING THE EVOLUTIONARY HISTORY OF THE HEPATITIS B VIRUS USING ANCIENT GENOMIC DATA AND RECOMBINATION-AWARE PHYLOGENETIC ANALYSES Arthur Kocher |
| 1:25 pm | EVOLUTIONARY DYNAMICS GIVING RISE TO NOROVIRUS GII.4 VARIANTS Michael Martin |
| 1:50 pm | HIV-1 GROUP M ENV GENETIC DIVERSITY SINCE 1980 Eric Lewitus |
| 2:15 pm | TRACKING MUTATIONS RESPONSIBLE FOR HUMAN EMERGENCE OF INFLUENZA A VIRUSES Spyros Lytras |
| 2:40 pm | Break |
| Transmission Dynamics & Clusters - HIV Session chairs: Andrew Leigh-Brown & Tetya Vasylyeva |
|
| 2:55 pm | THE EVOLUTIONARY FEATURES OF THE TRANSMITTED HIV VARIANT Lele Zhao |
| 3:20 pm | ESTIMATING THE POTENTIAL TO PREVENT LOCALLY ACQUIRED HIV INFECTIONS IN A UNAIDS FAST-TRACK CITY, AMSTERDAM Alexandra Blenkinsop |
| 3:45 pm | PHYLOGENETIC PRIORITIZATION OF HIV-1 TRANSMISSION CLUSTERS WITHIN VIRAL LINEAGE-LEVEL DIVERSIFICATION RATES Rachel Miller |
| 4:10 pm | THE AGE AND SEX DYNAMICS OF HETEROSEXUAL HIV TRANSMISSION IN ZAMBIA LARGELY FOLLOW TYPICAL PATTERNS OF SEXUAL MIXING IN YOUNG PEOPLE Matthew Hall |
| 4:35 pm | BIOMARKER AND SEQUENCE INFORMED TRANSMISSION HISTORY INFERENCE OF HIV-1 CRF01 IN SWEDEN Erik Lundgren |
| 5:00 pm | DYNAMICS OF THE SUBTYPE D HIV EPIDEMIC IN UGANDA DRIVEN BY X4 TROPISM Heather Grant |
| 5:25 pm | Live poster session |
| 7:15 pm | Dinner at Dining Hall |
Thursday, June 23, 2022
| 6:45 - 7:30 am | Breakfast at Dining Hall |
| Transmission Dynamics & Clusters - SARS-CoV-2 Session chairs: Manon Ragonnet-Cronin & Jonathan Pekar |
|
| 8:00 am | FACTORS AFFECTING SELECTION AND COMPETITION BETWEEN VARIANTS IN AN ONGOING EPIDEMIC Anjalika Nande |
| 8:25 am | ESTIMATING OVERDISPERSION IN SARS-COV-2 THROUGH SEQUENCE CLUSTERS Emma Hodcroft |
| 8:50 am | SARS-COV-2 LINEAGES: LESSONS LEARNED AND PERPSECTIVES FOR FUTURE EPIDEMIC TRACKING Aine O'Toole |
| 9:15 am | DOMINANCE OF NEW VARIANTS DURING THE SARS-COV-2 EPIDEMIC IN SWITZERLAND Martina Reichmuth |
| 9:40 am | Break |
| Software, Tools & Methods I Session chairs: Art Poon |
|
| 10:55 am | RASCL: RAPID ASSESSMENT OF SELECTION IN CLADES THROUGH MOLECULAR SEQUENCE ANALYSIS Alexander Lucaci |
| 11:20 am | EFFICIENT RECONSTRUCTION OF VIRAL ANCESTRAL RECOMBINATION GRAPHS USING MAXIMUM AGREEMENT FORESTS David Rasmussen |
| 11:45 am | COVARIATION OF VIRAL RECOMBINATION WITH SINGLE NUCLEOTIDE VARIANTS DURING VIRUS EVOLUTION REVEALED BY COVAMA Shiyi Wang |
| 12:10 pm | INFERRING TRANSMISSION DYNAMICS FOR EMERGING VIRUSES USING SEGREGATING SITES Yeongseon Park |
| 12:35 pm | Lunch |
| Software, Tools & Methods II Session chairs: Sergei Pond & Jennifer Havens |
|
| 1:30 pm | SCALABLE RANDOM-EFFECTS SUBSTITUTION MODELS FOR PHYLOGENETICS Andrew Magee |
| 1:55 pm | BAYROOT: A BAYESIAN PHYLOGENETIC APPROACH TO DATING HIV RESERVOIR SEQUENCES Art Poon |
| 2:20 pm | MODELING SITE-DEPENDENT EPISTATIC SELECTION IN A PHYLOGENETIC CONTEXT Stephen Shank |
| 2:45 pm | BBD: A BEAST2 PACKAGE FOR EXTENDING TIP DATE SAMPLING Bradley Jones |
| 3:10 pm | TAKING A DEEP LEARNING APPROACH TO REAL-TIME HIV OUTBREAK DETECTION WITH GENETIC DATA Michael Kupperman |
| 3:35 pm | PHYLODYNAMIC BOOSTED REGRESSION FOR INFERENCE OF PATHOGEN FITNESS Lenora Kepler |
| 4:00 pm | Break |
| 4:15 pm | KEYNOTE: ELICITING BROADLY PROTECTIVE ANTIBODIES AGAINST SARBECOVIRUSES BY MOSAIC NANOPARTICLE VACCINATION Pamela Bjorkman, PhD |
| 5:15 pm | Posters |
| 7:15pm | Dinner at Dining Hall |
Friday, June 24, 2022
| 6:45 - 7:30 am | Breakfast |
| 8:00 am | Announcements |
| Vaccines & Immunology Session chairs: Bethany Dearlove & Eric Lewitus |
|
| 8:05 am | DISCOVERY & DEVELOPMENT OF THERAPEUTIC INTERFERING PARTICLES (TIPS): SINGLE-ADMINISTRATION AND HIV ANTIVIRALS WITH HIGH BARRIERS TO THE EVOLUTION OF RESISTANCE Leor Weinberger |
| 8:30 am | LOW HVTN 705 CLINICAL VACCINE EFFICACY DOES NOT RULE OUT HIGH PER-CONTACT VACCINE EFFICACY Paul Edlefsen |
| Within Host Dynamics Session chairs: Matthew Hall & Joel Wertheim |
|
| 8:55 am |
SARS-COV-2: HOW RELIABLE ARE ESTIMATES OF INFECTION TIMES AND OTHER PARAMETERS IN VIRAL DYNAMIC MODELS? |
| 9:20 am | ON THE ROLE OF IFN IN EARLY HIV REBOUND DYNAMICS AFTER ANALYTICAL TREATMENT INTERRUPTION Ruian Ke |
| 9:45 am | MACHINE LEARNING PREDICTION AND PHYLOANATOMIC MODELING OF VIRAL NEUROADAPTIVE SIGNATURES IN THE MACAQUE MODEL OF HUMAN IMMUNODEFICIENCY VIRUS-MEDIATED NEUROPATHOLOGY Andrea Ramirez-Mata |
| 10:10 am | Break |
| 10:40 am | MATHEMATICAL MODELING OF ARVS DIFFUSION INTO THE LYMPH NODES TO INVESTIGATE DRUG TRANSPORT MECHANISMS Ryan Zurakowski |
| 11:05 am | ESTIMATING HIV PROVIRAL INTEGRATION DATES WITH BEAST2 Bradley Jones |
| 11:30 am | CAPTURING INTRAHOST RECOMBINATION OF SARS-COV-2 DURING SUPERINFECTION WITH ALPHA AND EPSILON VARIANTS IN NEW YORK CITY Joel Wertheim |
| 12:30 pm | Adjourn |